RockCluster: Submit Job - Revision history

Onnowpurbo at 03:37, 30 July 2011

2011-07-30T03:37:12Z

← Older revision		Revision as of 03:37, 30 July 2011
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	cd ~		cd ~
	/opt/~~mpich~~/gnu/bin/mpirun -v -np 3 -machinefile machines \		/opt/mpich2/gnu/bin/mpirun -v -np 3 -machinefile machines \
	tachyon/compile/linux-mpich/tachyon +V tachyon/scenes/balls.dat		tachyon/compile/linux-mpich/tachyon +V tachyon/scenes/balls.dat

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	#$ -j y		#$ -j y
	#$ -S /bin/bash		#$ -S /bin/bash
	/opt/~~mpich~~/gnu/bin/mpirun -v -np $NSLOTS -machinefile $TMPDIR/machines \		/opt/mpich2/gnu/bin/mpirun -v -np $NSLOTS -machinefile $TMPDIR/machines \
	tachyon/compile/linux-mpich/tachyon +V tachyon/scenes/balls.dat		tachyon/compile/linux-mpich/tachyon +V tachyon/scenes/balls.dat

Onnowpurbo: /* Submit Job Menggunakan qsub */

2011-07-30T03:36:32Z

Submit Job Menggunakan qsub

← Older revision		Revision as of 03:36, 30 July 2011
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	==Submit Job Menggunakan qsub==		==Submit Job Menggunakan qsub==

			Cek

			qstat -f

			Cek

			qconf -sq compute-0-0.q
			qconf -sq compute-0-1.q
			qconf -sq compute-0-2.q

			Buat file

			vi tachyon.job

			isi

			#$ -cwd
			#$ -j y
			#$ -S /bin/bash
			/opt/mpich/gnu/bin/mpirun -v -np $NSLOTS -machinefile $TMPDIR/machines \
			tachyon/compile/linux-mpich/tachyon +V tachyon/scenes/balls.dat

			Submit job (untuk 3 processor)

			qsub -pe mpich 3 tachyon.job

	==Referensi==		==Referensi==

Onnowpurbo at 03:28, 30 July 2011

2011-07-30T03:28:19Z

← Older revision		Revision as of 03:28, 30 July 2011
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	Jalankan Tachyon di tiga (3) slave machine dengan perintah		Jalankan Tachyon di tiga (3) slave machine dengan perintah

			cd ~
	/opt/mpich/gnu/bin/mpirun -v -np 3 -machinefile machines \		/opt/mpich/gnu/bin/mpirun -v -np 3 -machinefile machines \
	tachyon/compile/linux-mpich/tachyon +V tachyon/scenes/balls.dat		tachyon/compile/linux-mpich/tachyon +V tachyon/scenes/balls.dat

Onnowpurbo at 03:24, 30 July 2011

2011-07-30T03:24:56Z

← Older revision		Revision as of 03:24, 30 July 2011
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	lakukan		lakukan

			cd ~
	tar xzf tachyon-0.99b2.tar.gz		tar xzf tachyon-0.99b2.tar.gz
	cd tachyon/unix		cd tachyon/unix
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	* Ubah di new entry linux-lam ke linux-mpich		* Ubah di new entry linux-lam ke linux-mpich
	* Ubah "CC = hcc" ke "CC = gcc"		* Ubah "CC = hcc" ke "CC = gcc"
	* Ubah -I$(LAMHOME)/h ke -I/opt/~~mpich~~/gnu/include		* Ubah -I$(LAMHOME)/h ke -I/opt/mpich2/gnu/include
	* Ubah -L$(LAMHOME)/lib ke -L/opt/~~mpich~~/gnu/lib		* Ubah -L$(LAMHOME)/lib ke -L/opt/mpich2/gnu/lib
	* Ubah -lmpi to -lmpich		* Ubah -lmpi to -lmpich
	* Save		* Save
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	Jalankan		Jalankan

			cd ~
			cd tachyon/unix
	make linux-mpich		make linux-mpich

Onnowpurbo at 03:17, 30 July 2011

2011-07-30T03:17:47Z

← Older revision		Revision as of 03:17, 30 July 2011
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	* http://www.photonlimited.com/~johns/tachyon/files/0.99b2/		* http://www.photonlimited.com/~johns/tachyon/files/0.99b2/

	~~Lakukan~~		Copy ke front end rockcluster

			scp tachyon-0.99b2.tar.gz root@192.168.0.120:

			Masuk ke front end rockcluster

			ssh root@192.168.0.120

			lakukan

			tar xzf tachyon-0.99b2.tar.gz
			cd tachyon/unix

			Buka

			vi Make-arch

			Lakukan

	1. ~~Copy the file tachyon~~-~~0.97.tar.gz~~ (~~Tachyon source and examples~~) ~~from the workshop CD and untar them in your home directory with:~~		* Cari config option untuk "linux-lam"
			* Copy set option ini ke entry baru.
			* Ubah di new entry linux-lam ke linux-mpich
			* Ubah "CC = hcc" ke "CC = gcc"
			* Ubah -I$(LAMHOME)/h ke -I/opt/mpich/gnu/include
			* Ubah -L$(LAMHOME)/lib ke -L/opt/mpich/gnu/lib
			* Ubah -lmpi to -lmpich
			* Save

	~~tar xzf tachyon-0.97.tar.gz~~		Jalankan

	~~2. cd tachyon/unix~~		make linux-mpich
	~~3. Use a text editor to open the file Make-arch~~
	~~4. Search for the config options for "linux-lam"~~
	~~5. Copy this set of options to a new entry.~~
	~~6. Change (in the new entry) linux-lam to linux-mpich~~
	~~7. Change "CC = hcc" to "CC = gcc"~~
	~~8. Change -I$(LAMHOME)/h to -I/opt/mpich/gnu/include~~
	~~9. Change -L$(LAMHOME)/lib to -L/opt/mpich/gnu/lib~~
	~~10. Change -lmpi to -lmpich~~
	~~11. Save, quit the editor and run "~~make linux-mpich~~" to build tachyon. If this doesn't work you probably missed on of the edits above, or applied them in the wrong place. The tachyon binary will end up in compile/linux-mpich/.~~
	~~12. cd (back to your home directory)~~
	~~13. Use a text editor to create the file machines containing:~~

	~~compute~~-~~0-0~~		tachyon binary akan tampak di compile/linux-mpich/.
	~~compute-0-1~~
	~~compute-0-2~~

	~~14. Run Tachyon on the three slave~~ machines ~~with:~~		cd ~
			vi machines

	~~/opt/mpich/gnu/bin/mpirun -v -np 3 -machinefile machines \~~		isi dengan misalnya
	~~tachyon/compile/linux-mpich/tachyon +V tachyon/scenes/balls.dat~~

	~~15. Look at the timing output, which is broken into different stages of the calculation. Run on two and one processors (change~~ -~~np 3) and calculate speedups for the different stages as well as the total time.~~		compute-0-0
			compute-0-1
			compute-0-2

			Jalankan Tachyon di tiga (3) slave machine dengan perintah

			/opt/mpich/gnu/bin/mpirun -v -np 3 -machinefile machines \
			tachyon/compile/linux-mpich/tachyon +V tachyon/scenes/balls.dat

	==Submit Job Menggunakan qsub==		==Submit Job Menggunakan qsub==

Onnowpurbo at 03:07, 30 July 2011

2011-07-30T03:07:14Z

← Older revision		Revision as of 03:07, 30 July 2011
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			==Submit Job Menggunaan mpirun==

			Ambil source code tachyon dari

			* http://www.photonlimited.com/~johns/tachyon/
			* http://www.photonlimited.com/~johns/tachyon/files/0.99b2/

			Lakukan



			1. Copy the file tachyon-0.97.tar.gz (Tachyon source and examples) from the workshop CD and untar them in your home directory with:

			tar xzf tachyon-0.97.tar.gz

			2. cd tachyon/unix
			3. Use a text editor to open the file Make-arch
			4. Search for the config options for "linux-lam"
			5. Copy this set of options to a new entry.
			6. Change (in the new entry) linux-lam to linux-mpich
			7. Change "CC = hcc" to "CC = gcc"
			8. Change -I$(LAMHOME)/h to -I/opt/mpich/gnu/include
			9. Change -L$(LAMHOME)/lib to -L/opt/mpich/gnu/lib
			10. Change -lmpi to -lmpich
			11. Save, quit the editor and run "make linux-mpich" to build tachyon. If this doesn't work you probably missed on of the edits above, or applied them in the wrong place. The tachyon binary will end up in compile/linux-mpich/.
			12. cd (back to your home directory)
			13. Use a text editor to create the file machines containing:

			compute-0-0
			compute-0-1
			compute-0-2

			14. Run Tachyon on the three slave machines with:

			/opt/mpich/gnu/bin/mpirun -v -np 3 -machinefile machines \
			tachyon/compile/linux-mpich/tachyon +V tachyon/scenes/balls.dat

			15. Look at the timing output, which is broken into different stages of the calculation. Run on two and one processors (change -np 3) and calculate speedups for the different stages as well as the total time.



			==Submit Job Menggunakan qsub==



	==Referensi==		==Referensi==

Onnowpurbo at 03:55, 22 July 2011

2011-07-22T03:55:07Z

← Older revision		Revision as of 03:55, 22 July 2011
Line 1:		Line 1:


	==Referensi==		==Referensi==

	* http://www.ks.uiuc.edu/Training/Workshop/Cluster/files/using_rocks.html		* http://www.ks.uiuc.edu/Training/Workshop/Cluster/files/using_rocks.html
	* http://www.ks.uiuc.edu/Research/namd/		* http://www.ks.uiuc.edu/Research/namd/
			* https://wiki.rocksclusters.org/wiki/index.php/Make_your_frontend_run_queued_jobs
			* https://wiki.rocksclusters.org/wiki/index.php/Run_commands_on_the_cluster_from_DOS/Windows_Command_Prompt

	==Pranala Menarik==		==Pranala Menarik==

	* [[RockCluster]]		* [[RockCluster]]

Onnowpurbo: New page: ==Referensi== * http://www.ks.uiuc.edu/Training/Workshop/Cluster/files/using_rocks.html * http://www.ks.uiuc.edu/Research/namd/ ==Pranala Menarik== * RockCluster

2011-07-22T03:14:59Z

New page: ==Referensi== * http://www.ks.uiuc.edu/Training/Workshop/Cluster/files/using_rocks.html * http://www.ks.uiuc.edu/Research/namd/ ==Pranala Menarik== * RockCluster

New page

==Referensi==

* http://www.ks.uiuc.edu/Training/Workshop/Cluster/files/using_rocks.html
* http://www.ks.uiuc.edu/Research/namd/

==Pranala Menarik==

* [[RockCluster]]